In install.packages() : ): RRlib ( R ) libiconv.so LD_LIBRARY_PATH R Sys.getenv("LD_LIBRARY_PATH") R RR Using indicator constraint with two variables, Does there exist a square root of Euler-Lagrange equations of a field? Connect and share knowledge within a single location that is structured and easy to search. I am running a new install of R (3.5.0) and RStudio (1.1.414). check that immediate dependencies are installed, but not that the dependencies of those, etc are installed. [7] survival_2.40-1 foreign_0.8-67 BiocParallel_1.8.1 package rlang was built under R version 3.5.1. 1. [1] xfun0.17 splines3.6.1 lattice0.20-41 colorspace1.4-1 vctrs0.3.4 I tried following the instructions for 2019.7 as well and I am getting the same error. rev2023.3.3.43278. Making statements based on opinion; back them up with references or personal experience. Rload failed - DESeq2: Error: package or namespace load failed for 'DESeq2': objects Should I update the Bioconductor to latest version instead? I thought that working in a new environment would help, but it didnt. Bioconductor version 3.11 (BiocManager 1.30.10), R 4.0.1 (2020-06-06) [1] RCurl1.98-1.1 SummarizedExperiment1.16.1 DelayedArray0.12.2 Installing packages directly into that location fixes the issue but is not desirable for all the reasons that people might want to use custom locations (e.g. [4] colorspace_1.3-2 htmltools_0.3.5 base64enc_0.1-3 Erasmus+ funds available! Content type 'application/zip' length 386703 bytes (377 KB) The nature of simulating nature: A Q&A with IBM Quantum researcher Dr. Jamie We've added a "Necessary cookies only" option to the cookie consent popup. March 1, 2023, 8:52pm Upgrade to Microsoft Edge to take advantage of the latest features, security updates, and technical support. [10] S4Vectors0.24.3 BiocGenerics0.32.0 reshape21.4.3 it would be good to hear any speculation you have of how this might have happened). Installing Hmisc as suggested above did not solve the issue. Error: package or namespace load failed for GenomeInfoDb in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): Open source scripts, reports, and preprints for in vitro biology, genetics, bioinformatics, crispr, and other biotech applications. Installation instructions to use this [41] magrittr1.5 RCurl1.98-1.2 tibble3.0.3 Formula1.2-3 cluster2.1.0 Use this. Finally After 3-4 manual installations of missing packages everything worked.
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